YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56205297, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.58
Transmembrane Helix	7	26	0.59
Non-Cytoplasmic	27	114	0.82
Transmembrane Helix	115	135	0.84
Cytoplasmic	136	143	0.92
Transmembrane Helix	144	164	0.92
Non-Cytoplasmic	165	172	0.84
Transmembrane Helix	173	195	0.88
Cytoplasmic	196	203	0.75
Transmembrane Helix	204	223	0.46
Non-Cytoplasmic	224	228	0.44
Transmembrane Helix	229	250	0.93
Cytoplasmic	251	295	0.52
Transmembrane Helix	296	318	0.87
Non-Cytoplasmic	319	323	0.56
Transmembrane Helix	324	343	0.83
Cytoplasmic	344	349	0.59
Transmembrane Helix	350	372	0.83
Non-Cytoplasmic	373	385	0.62
Transmembrane Helix	386	408	0.84
Cytoplasmic	409	437	0.70
Transmembrane Helix	438	460	0.85
Non-Cytoplasmic	461	468	0.75
Transmembrane Helix	469	492	0.92
Cytoplasmic	493	507	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKWYLMTVV VLIGLTVRWT VSLNSYSGAG KPPMFGDYEA QRHWQEITFN LPVKQWYFNS  60
   61 SDNNLQYWGL DYPPLTAYHS LLCAYVAKFI NPDWIALHTS RGYESQAHKL FMRTTVLIAD 120
  121 LLIYIPAVVL YCCCLKEIST KKKIANALCI LLYPGLILID YGHFQYNSVS LGFALWGVLG 180
  181 ISCDCDLLGS LAFCLAINYK QMELYHALPF FCFLLGKCFK KGLKGKGFVL LVKLACIVVA 240
  241 SFVLCWLPFF TEREQTLQVL RRLFPVDRGL FEDKVANIWC SFNVFLKIKD ILPRHIQLIM 300
  301 SFCSTFLSLL PACIKLILQP SSKGFKFTLV SCALSFFLFS FQVHEKSILL VSLPVCLVLS 360
  361 EIPFMSTWFL LVSTFSMLPL LLKDELLMPS VVTTMAFFIA CVTSFSIFEK TSEEELQLKS 420
  421 FSISVRKYLP CFTFLSRIIQ YLFLISVITM VLLTLMTVTL DPPQKLPDLF SVLVCFVSCL 480
  481 NFLFFLVYFN IIIMWDSKSG RNQKKIS