YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29791481, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	98	0.85
Transmembrane Helix	99	125	0.73
Non-Cytoplasmic	126	140	0.73
Transmembrane Helix	141	161	0.80
Cytoplasmic	162	168	0.48
Transmembrane Helix	169	203	0.56
Non-Cytoplasmic	204	224	0.54
Transmembrane Helix	225	247	0.65
Cytoplasmic	248	347	0.55
Transmembrane Helix	348	370	0.93
Non-Cytoplasmic	371	398	0.53
Transmembrane Helix	399	433	0.74
Cytoplasmic	434	440	0.71
Transmembrane Helix	441	462	0.85
Non-Cytoplasmic	463	469	0.87
Transmembrane Helix	470	492	0.91
Cytoplasmic	493	512	0.91
Transmembrane Helix	513	533	0.94
Non-Cytoplasmic	534	539	0.72
Transmembrane Helix	540	561	0.91
Cytoplasmic	562	639	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSYGERLGS PAVSPLPVRG GHVMRGTAFA YVPSPQVLHR IPGTSAYAFP SLGPVALAEH  60
   61 TCPCGEVLER HEPLPAKLAL EEEQKPESRL VPKLRQAGAM LLKVPLMLTF LYLFVCSLDM 120
  121 LSSAFQLAGG KVAGDIFKDN AILSNPVAGL VVGILVTVLV QSSSTSTSII VSMVSSGLLE 180
  181 VSSAIPIIMG SNIGTSVTNT IVALMQAGDR TDFRRAFAGA TVHDCFNWLS VLVLLPLEAA 240
  241 TGYLHHITRL VVASFNIHGG RDAPDLLKII TEPFTKLIIQ LDESVITSIA TGDESLRNHS 300
  301 LIQIWCHPDS LQAPTSMSRA EANSSQTLGN ATMEKCNHIF VDTGLPDLAV GLILLAGALV 360
  361 LLCTCLILLV KMLNSLLKGQ VAKVIQKVIN TDFPAPFTWV TGYFAMVVGA SMTFVVQSSS 420
  421 VFTSAITPLI GLGVISIERA YPLTLGSNIG TTTTAILAAL ASPREKLSSA FQIALCHFFF 480
  481 NISGILLWYP VPCTRLPIRM AKALGKRTAK YRWFAVLYLL VCFLLLPSLV FGISMAGWQV 540
  541 MVGVGTPFGA LLAFVVLINV LQSRSPGHLP KWLQTWDFLP RWMHSLKPLD HLITRATLCC 600
  601 ARPEPRSPPL PPRVFLEELP PATPSPRLAL PAHHNATRL