YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29171738, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDKTRLPYV ALDVLCVLLA SMPMAVLKLG QIYPFQRGFF CKDNSINYPY HDSTVTSTVL  60
   61 ILVGVGLPIS SIILGETLSV YCNLLHSNSF IRNNYIATIY KAIGTFLFGA AASQSLTDIA 120
  121 KYSIGRLRPH FLDVCDPDWS KINCSDGYIE YYICRGNAER VKEGRLSFYS GHSSFSMYCM 180
  181 LFVALYLQAR MKGDWARLLR PTLQFGLVAV SIYVGLSRVS DYKHHWSDVL TGLIQGALVA 240
  241 ILVAVYVSDF FKERTSFKER KEEDSHTTLH ETPTTGNHYP SNHQP

Type	Start	End	Confidence
Cytoplasmic	1	8	0.89
Transmembrane Helix	9	30	0.90
Non-Cytoplasmic	31	57	0.90
Transmembrane Helix	58	81	0.84
Cytoplasmic	82	96	0.78
Transmembrane Helix	97	116	0.81
Non-Cytoplasmic	117	167	0.87
Transmembrane Helix	168	189	0.85
Cytoplasmic	190	197	0.84
Transmembrane Helix	198	217	0.88
Non-Cytoplasmic	218	228	0.76
Transmembrane Helix	229	251	0.88
Cytoplasmic	252	285	0.94