YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22027475
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDENIFLFV PNLIGECCPR PGPNERARGL GGLPDPALSP RVPFQGYARI VFAIISFYFM  60
   61 PCCPLTASSF YLLSGLLDAF DGHAARALNQ GTRFGAMLDM LTDRCSTMCL LVNLALLYPG 120
  121 ATLFFQISMS LDVASHWLHL HSSVVRGSES HKMIDLSGNP VLRIYYTSRP ALFTLCAGNE 180
  181 LFYCLLYLFH FSEGPLVGSV GLFRMGLWVT APIALLKSLI SVIHLITAAR NMAALDAADR 240
  241 AKKK

Type	Start	End	Confidence
Cytoplasmic	1	49	0.94
Transmembrane Helix	50	73	0.87
Non-Cytoplasmic	74	106	0.87
Transmembrane Helix	107	129	0.70
Cytoplasmic	130	170	0.83
Transmembrane Helix	171	191	0.89
Non-Cytoplasmic	192	206	0.83
Transmembrane Helix	207	228	0.87
Cytoplasmic	229	244	0.89