YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4219088, gi\|5...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGLGGPHW VAVGLLTWAT LGLLVAGLGG HDDLHDDLQE DFHGHSHRHS HEDFHHGHSH  60
   61 AHGHGHTHES IWHGHTHDHD HGHSHEDLHH GHSHGYSHES LYHRGHGHDH EHSHGGYGES 120
  121 GAPGIKQDLD AVTLWAYALG ATVLISAAPF FVLFLIPVES NSPRHRSLLQ ILLSFASGGL 180
  181 LGDAFLHLIP HALEPHSHHT LEQPGHGHSH SGQGPILSVG LWVLSGIVAF LVVEKFVRHV 240
  241 KGGHGHSHGH GHAHSHTRGS HGHGRQERST KEKQSSEEEG KETRGVQKRR GGSTVPKDGP 300
  301 VRPQNAEEEK RGLDLRVSGY LNLAADLAHN FTDGLAIGAS FRGGRGLGIL TTMTVLLHEV 360
  361 PHEVGDFAIL VQSGCTKKQA MRLQLLTAVG ALAGTAVPFS LKEEQWTVKL QVVQVLAGSC 420
  421 HLLQVALST

Type	Start	End	Confidence
Cytoplasmic	1	8	0.78
Transmembrane Helix	9	29	0.81
Non-Cytoplasmic	30	133	0.99
Transmembrane Helix	134	156	0.93
Cytoplasmic	157	167	0.88
Transmembrane Helix	168	189	0.93
Non-Cytoplasmic	190	213	0.90
Transmembrane Helix	214	233	0.94
Cytoplasmic	234	429	0.84