YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4885275, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDWSFLGNI LEEVNEHSTV IGRVWLTVLF IFRILILGTA AEFVWGDEQS DFVCNTQQPG  60
   61 CENVCYDEAF PISHIRLWVL QIIFVSTPSL MYVGHAVHYV RMEEKRKSRD EELGQQAGTN 120
  121 GGPDQGSVKK SSGSKGTKKF RLEGTLLRTY ICHIIFKTLF EVGFIVGHYF LYGFRILPLY 180
  181 RCSRWPCPNV VDCFVSRPTE KTIFILFMLS VASVSLFLNV MELSHLGLKG IRSALKRPVE 240
  241 QPLGEIPEKS LHSIAVSSIQ KAKGYQLLEE EKIVSHYFPL TEVGMVETSP LPAKPFNQFE 300
  301 EKISTGPLGD LSRGYQETLP SYAQVGAQEV EGEGPPAEEG AEPEVGEKKE EAERLTTEEQ 360
  361 EKVAVPEGEK VETPGVDKEG EKEEPQSEKV SKQGLPAEKT PSLCPELTTD DARPLSRLSK 420
  421 ASSRARSDDL TV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	41	0.91
Non-Cytoplasmic	42	76	0.94
Transmembrane Helix	77	99	0.91
Cytoplasmic	100	148	0.97
Transmembrane Helix	149	171	0.83
Non-Cytoplasmic	172	202	0.90
Transmembrane Helix	203	226	0.85
Cytoplasmic	227	432	0.90