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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|219945, gi|13...
Protein type: Transmembrane
Type Confidence: 0.70
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVGEEPLEK AARARTAKDP NTYKVLSLVL SVCVLTTILG CIFGLKPSCA KEVKSCKGRC  60
   61 FERTFGNCRC DAACVELGNC CLDYQETCIE PEHIWTCNKF RCGEKRLTRS LCACSDDCKD 120
  121 KGDCCINYSS VCQGEKSWVE EPCESINEPQ CPAGFETPPT LLFSLDGFRA EYLHTWGGLL 180
  181 PVISKLKKCG TYTKNMRPVY PTKTFPNHYS IVTGLYPESH GIIDNKMYDP KMNASFSLKS 240
  241 KEKFNPEWYK GEPIWVTAKY QGLKSGTFFW PGSDVEINGI FPDIYKMYNG SVPFEERILA 300
  301 VLQWLQLPKD ERPHFYTLYL EEPDSSGHSY GPVSSEVIKA LQRVDGMVGM LMDGLKELNL 360
  361 HRCLNLILIS DHGMEQGSCK KYIYLNKYLG DVKNIKVIYG PAARLRPSDV PDKYYSFNYE 420
  421 GIARNLSCRE PNQHFKPYLK HFLPKRLHFA KSDRIEPLTF YLDPQWQLAL NPSERKYCGS 480
  481 GFHGSDNVFS NMQALFVGYG PGFKHGIEAD TFENIEVYNL MCDLLNLTPA PNNGTHGSLN 540
  541 HLLKNPVYTP KHPKEVHPLV QCPFTRNPRD NLGCSCNPSI LPIEDFQTQF NLTVAEEKII 600
  601 KHETLPYGRP RVLQKENTIC LLSQHQFMSG YSQDILMPLW TSYTVDRNDS FSTEDFSNCL 660
  661 YQDFRIPLSP VHKCSFYKNN TKVSYGFLSP PQLNKNSSGI YSEALLTTNI VPMYQSFQVI 720
  721 WRYFHDTLLR KYAEERNGVN VVSGPVFDFD YDGRCDSLEN LRQKRRVIRN QEILIPTHFF 780
  781 IVLTSCKDTS QTPLHCENLD TLAFILPHRT DNSESCVHGK HDSSWVEELL MLHRARITDV 840
  841 EHITGLSFYQ QRKEPVSDIL KLKTHLPTFS QED

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle