YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|284164, gi\|178991
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKWHVGGRR GSPRQWGATA RGRDLEAVRR GGCGSVGRRR QRRRRRRRRM RRMRRMWATQ  60
   61 GLAVRVALSV LPGSRALRPG DCEVCISYLG RFYQDLKDRD VTFSPATIEN ELIKFCREAR 120
  121 GKENRLCYYI GATDDAATKI INEVSKPLAH HIPVEKICEK LKKKDSQICE LKYDKQIDLS 180
  181 TVDLKKLRVK ELKKILDDWG ETCKGCAEKS DYIRKINELM PKYAPKAASA PTDL

Type	Start	End	Confidence
Cytoplasmic	1	52	0.81
Transmembrane Helix	53	71	0.75
Non-Cytoplasmic	72	234	0.99