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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|3299885, gi|4...
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIYDTQTLG VVVFGGFMVV SAIGIFLVST FSMKETSYEE ALANQRKEMA KTHHQKVEKK  60
   61 KKEKTVEKKG KTKKKEEKPN GKIPDHDPAP NVTVLLREPV RAPAVAVAPT PVQPPIIVAP 120
  121 VATVPAMPQE KLASSPKDKK KKEKKVAKVE PAVSSVVNSI QVLTSKAAIL ETAPKEGRNT 180
  181 DVAQSPEAPK QEAPAKKKSG SKKKGPPDAD GPLYLPYKTL VSTVGSMVFN EGEAQRLIEI 240
  241 LSEKAGIIQD TWHKATQKGD PVAILKRQLE EKEKLLATEQ EDAAVAKSKL RELNKEMAAE 300
  301 KAKAAAGEAK VKKQLVAREQ EITAVQARMQ ASYREHVKEV QQLQGKIRTL QEQLENGPNT 360
  361 QLARLQQENS ILRDALNQAT SQVESKQNAE LAKLRQELSK VSKELVEKSE AVRQDEQQRK 420
  421 ALEAKAAAFE KQVLQLQASH RESEEALQKR LDEVSRELCH TQSSHASLRA DAEKAQEQQQ 480
  481 QMAELHSKLQ SSEAEVRSKC EELSGLHGQL QEARAENSQL TERIRSIEAL LEAGQARDAQ 540
  541 DVQASQAEAD QQQTRLKELE SQVSGLEKEA IELREAVEQQ KVKNNDLREK NWKAMEALAT 600
  601 AEQACKEKLH SLTQAKEESE KQLCLIEAQT MEALLALLPE LSVLAQQNYT EWLQDLKEKG 660
  661 PTLLKHPPAP AEPSSDLASK LREAEETQST LQAECDQYRS ILAETEGMLR DLQKSVEEEE 720
  721 QVWRAKVGAA EEELQKSRVT VKHLEEIVEK LKGELESSDQ VREHTSHLEA ELEKHMAAAS 780
  781 AECQNYAKEV AGLRQLLLES QSQLDAAKSE AQKQSDELAL VRQQLSEMKS HVEDGDIAGA 840
  841 PASSPEAPPA EQDPVQLKTQ LEWTEAILED EQTQRQKLMA EFEEAQTSAC RLQEELEKLR 900
  901 TAGPLESSET EEASQLKERL EKEKKLTSDL GRAATRLQEL LKTTQEQLAR EKDTVKKLQE 960
  961 QLEKAEDGSS SKEGTSV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle