YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85567678, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVQCQQSPV LAGSATLVAL GALALYVAKP SGYGKHTESL KPAATRLPAR AAWFLQELPS  60
   61 FAVPAGILAR QPLSLFGPPG TVLLGLFCLH YFHRTFVYSL LNRGRPYPAI LILRGTAFCT 120
  121 GNGVLQGYYL IYCAEYPDGW YTDIRFSLGV FLFILGMGIN IHSDYILRQL RKPGEISYRI 180
  181 PQGGLFTYVS GANFLGEIIE WIGYALATWS LPALAFAFFS LCFLGLRAFH HHRFYLKMFE 240
  241 DYPKSRKALI PFIF

Type	Start	End	Confidence
Cytoplasmic	1	7	0.48
Transmembrane Helix	8	28	0.80
Non-Cytoplasmic	29	74	0.54
Transmembrane Helix	75	93	0.91
Cytoplasmic	94	109	0.85
Transmembrane Helix	110	132	0.90
Non-Cytoplasmic	133	143	0.88
Transmembrane Helix	144	163	0.92
Cytoplasmic	164	182	0.77
Transmembrane Helix	183	202	0.86
Non-Cytoplasmic	203	208	0.61
Transmembrane Helix	209	229	0.91
Cytoplasmic	230	254	0.96