YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZUPT_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVPLILTIL AGAATFIGAF LGVLGQKPSN RLLAFSLGFA AGIMLLISLM EMLPAALAAE  60
   61 GMSPVLGYGM FIFGLLGYFG LDRMLPHAHP QDLMQKSVQP LPKSIKRTAI LLTLGISLHN 120
  121 FPEGIATFVT ASSNLELGFG IALAVALHNI PEGLAVAGPV YAATGSKRTA ILWAGISGLA 180
  181 EILGGVLAWL ILGSMISPVV MAAIMAAVAG IMVALSVDEL MPLAKEIDPN NNPSYGVLCG 240
  241 MSVMGFSLVL LQTAGIG

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.92
Transmembrane Helix	5	25	0.93
Cytoplasmic	26	31	0.89
Transmembrane Helix	32	55	0.87
Non-Cytoplasmic	56	63	0.67
Transmembrane Helix	64	85	0.86
Cytoplasmic	86	107	0.87
Transmembrane Helix	108	129	0.76
Non-Cytoplasmic	130	138	0.67
Transmembrane Helix	139	161	0.81
Cytoplasmic	162	169	0.82
Transmembrane Helix	170	192	0.93
Non-Cytoplasmic	193	198	0.74
Transmembrane Helix	199	217	0.95
Cytoplasmic	218	233	0.81
Transmembrane Helix	234	256	0.88
Non-Cytoplasmic	257	257	0.94