YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|166011602, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSTIFSQD SNSKRLLIAF AITTLFMVTE AIGGWLSGSL ALLADAGHML TDSAALFIAL  60
   61 MAVHFSQRKP DPRHTFGYLR LTTLAAFVNA AALLLIVILI VWEAVHRFFS PHEVMGTPML 120
  121 IIAIAGLLAN IFCFWILHKG EEEKNINVRA AALHVLSDLL GSVGAMIAAI VILTTGWTPI 180
  181 DPILSVLVSV LILRSAWRLL KESFHELLEG APQEIDINKL RKDLCTNIYE VRNIHHVHLW 240
  241 QVGEQRLMTL HAQVIPPLDH DALLQRIQDY LLHHYRISHA TVQMEYQHCG TPDCGINQAA 300
  301 PADGHHRHHH HE

Type	Start	End	Confidence
Cytoplasmic	1	15	0.97
Transmembrane Helix	16	36	0.94
Non-Cytoplasmic	37	45	0.71
Transmembrane Helix	46	65	0.93
Cytoplasmic	66	80	0.81
Transmembrane Helix	81	102	0.91
Non-Cytoplasmic	103	115	0.84
Transmembrane Helix	116	138	0.90
Cytoplasmic	139	150	0.92
Transmembrane Helix	151	173	0.89
Non-Cytoplasmic	174	179	0.66
Transmembrane Helix	180	197	0.86
Cytoplasmic	198	312	0.90