YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|194445075, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHSHSHADS HLPKDNNARR LLFAFIVTAG FMLLEVVGGI LSGSLALLAD AGHMLTDAAA  60
   61 LLFALLAVQF SRRPPTVRHT FGWLRLTTLA AFVNAIALVV ITLLIVWEAI ERFYTPRPVA 120
  121 GNLMMVIAVA GLLANLFAFW ILHRGSDEKN LNVRAAALHV MGDLLGSVGA IVAALIIIWT 180
  181 GWTPADPILS ILVSVLVLRS AWRLLKDSVN ELLEGAPVSL DINALQRHLS REIPEVRNVH 240
  241 HVHVWMVGEK PVMTLHAQVI PPHDHDALLE RIQDFLMHEY HIAHATIQME YQVCHGPDCH 300
  301 LNQTSSGHVH HH

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	42	0.96
Non-Cytoplasmic	43	50	0.71
Transmembrane Helix	51	70	0.92
Cytoplasmic	71	82	0.87
Transmembrane Helix	83	107	0.87
Non-Cytoplasmic	108	119	0.87
Transmembrane Helix	120	142	0.90
Cytoplasmic	143	156	0.89
Transmembrane Helix	157	179	0.89
Non-Cytoplasmic	180	184	0.67
Transmembrane Helix	185	202	0.77
Cytoplasmic	203	312	0.82