YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZIPA_VIBVU
Protein type:	Globular with Signal Peptide
Type Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQELRFVLIV VGALAIMALL FHGLWTSKKE GKAKFGDKPL SKLDLGESEP KESEMYVAPE  60
   61 DDYEIIRKER KEPAFEDEKP FSTSGVIGDP LIDDLHSGQD KENKFSQPKF DDDITVAEAE 120
  121 AAASIEQDAP AWVEQPQEID EPLTHHPDEI DAFSGEETIV ELDEPMSQTV EPELQVIVLN 180
  181 VHCAGDSPFV GTKLFDSMQQ NGLVYGEMDI FHRHLDMSGT GKVLFSVANM MHPGTLKHDD 240
  241 PAEFSTKGIS FFMTLPCYGE ADQNFNLMLK TAQKIADDLG GNVLDDKRNL MTPDRLAGYR 300
  301 RQIVEFKAAN A

Type	Start	End	Confidence
Signal Peptide	1	26	0.57
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	311	0.83