YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZIPA_VIBPA
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQELRFVLIV VGALAIAALL FHGLWSSKKE GKAKFGNKPL GKLDVDQGDK DSVEQERSFA  60
   61 PATEDDFEII RKDRKEPDFG MENTFDSKFE ADPLLGGVAE EKHSVKEEAE EIPSFVAMKN 120
  121 DVEDVAIQPS EVEEPMQEVV EEEIMPSAFD APKQEMEMVE EVAPAVVEQP EEPKPEPEMQ 180
  181 VIVLNVHCAG EEPFIGTELF DSMQQNGLIY GEMHIFHRHV DLSGNGKVLF SVANMMHPGT 240
  241 LEHGDPAEFS TKGISFFMTL PCYGEAEQNF NLMLRTAQQI ADDMGGNVLD DKRNLMTPDR 300
  301 LAAYRRQIVE FNAANA

Type	Start	End	Confidence
Signal Peptide	1	26	0.86
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	316	0.95