YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S39A1_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYLLQVKVG ALVGLLLLTL FFGFIPARMK WFHVTGGTEL HKAVLSFVSC FAGGVFLSAC  60
   61 LLDIIPDYLS DIHGELQKRD LDDGFPLPEF IMACGFFTVL ILEKMVLSCT EGHRNEETAP 120
  121 LLAPAAPNGH AHGHPSVNDL EGSGHHVHVD FHAHSSFRSF MLFLSLSLHS VFEGLAIGLQ 180
  181 TTNAKVLEIC IAILVHKSII VFSLSVKLVQ SAVKPLWVVL YVTVFAIMSP LGIGIGIVVI 240
  241 ETERQAGGLI QAVLEGLAAG TFIYITFLEI LPHELNSSER PLLKVLFLLC GFSIMAALCF 300
  301 LG

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.73
Transmembrane Helix	7	27	0.90
Cytoplasmic	28	42	0.69
Transmembrane Helix	43	65	0.92
Non-Cytoplasmic	66	84	0.76
Transmembrane Helix	85	107	0.67
Cytoplasmic	108	159	0.88
Transmembrane Helix	160	179	0.84
Non-Cytoplasmic	180	185	0.66
Transmembrane Helix	186	206	0.80
Cytoplasmic	207	216	0.73
Transmembrane Helix	217	240	0.93
Non-Cytoplasmic	241	247	0.80
Transmembrane Helix	248	268	0.93
Cytoplasmic	269	281	0.77
Transmembrane Helix	282	301	0.95
Non-Cytoplasmic	302	302	0.91