YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YTFF_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.90
Transmembrane Helix	8	28	0.96
Non-Cytoplasmic	29	36	0.85
Transmembrane Helix	37	57	0.91
Cytoplasmic	58	66	0.91
Transmembrane Helix	67	89	0.90
Non-Cytoplasmic	90	95	0.77
Transmembrane Helix	96	116	0.94
Cytoplasmic	117	124	0.86
Transmembrane Helix	125	147	0.89
Non-Cytoplasmic	148	155	0.89
Transmembrane Helix	156	177	0.92
Cytoplasmic	178	194	0.91
Transmembrane Helix	195	218	0.87
Non-Cytoplasmic	219	233	0.91
Transmembrane Helix	234	255	0.93
Cytoplasmic	256	263	0.74
Transmembrane Helix	264	284	0.94
Non-Cytoplasmic	285	291	0.77
Transmembrane Helix	292	311	0.93
Cytoplasmic	312	324	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVMISGVLY ALLAGLMWGL IFVGPLIVPE YPAMLQSMGR YLALGLIALP IAWLGRVRLR  60
   61 QLARRDWLTA LMLTMMGNLI YYFCLASAIQ RTGAPVSTMI IGTLPVVIPV FANLLYSQRD 120
  121 GKLAWGKLAP ALICIGIGLA CVNIAELNHG LPDFDWARYT SGIVLALVSV VCWAWYALRN 180
  181 ARWLRENPDK HPMMWATAQA LVTLPVSLIG YLVACYWLNT QTPDFSLPFG PRPLVFISLM 240
  241 VAIAVLCSWV GALCWNVASQ LLPTVILGPL IVFETLAGLL YTFLLRQQMP PLMTLSGIAL 300
  301 LVIGVVIAVR AKPEKPLTES VSES