YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YRFC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPPINFLPW RQQRRTAFLR FWLLMFVAPL LLAVGITLIL RLTGSAEARI DAVLLQAEQQ  60
   61 LARSLQITKP RLLEQQQLRE QRSQRQRQRQ FTRDWQSALE ALAALLPEHA WLTTISWQQG 120
  121 TLEIKGLTTS ITALNALETS LRQDASFHLN QRGATQQDAQ GRWQFEYQLT RKVSDEHVL

Type	Start	End	Confidence
Cytoplasmic	1	17	0.59
Transmembrane Helix	18	40	0.61
Non-Cytoplasmic	41	179	0.91