YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YQGA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIGPFINAS AVLLGGVLGA LLSQRLPERI RVSMTSIFGL ASLGIGILLV VKCANLPAMV  60
   61 LATLLGALIG EICLLEKGVN TAVAKAQNLF RHSRKKPAHE SFIQNYVAII VLFCASGTGI 120
  121 FGAMNEGMTG DPSILIAKSF LDFFTAMIFA CSLGIAVSVI SIPLLIIQLT LAWAAALILP 180
  181 LTTPSMMADF SAVGGLLLLA TGLRICGIKM FPVVNMLPAL LLAMPLSAAW TAWFA

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.79
Transmembrane Helix	6	23	0.87
Cytoplasmic	24	31	0.77
Transmembrane Helix	32	51	0.90
Non-Cytoplasmic	52	58	0.59
Transmembrane Helix	59	81	0.74
Cytoplasmic	82	101	0.79
Transmembrane Helix	102	124	0.92
Non-Cytoplasmic	125	139	0.68
Transmembrane Helix	140	167	0.80
Cytoplasmic	168	168	0.29
Transmembrane Helix	169	183	0.60
Non-Cytoplasmic	184	185	0.38
Transmembrane Helix	186	208	0.75
Cytoplasmic	209	212	0.47
Transmembrane Helix	213	234	0.89
Non-Cytoplasmic	235	235	0.57