YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YQEG_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.90
Transmembrane Helix	10	30	0.85
Non-Cytoplasmic	31	34	0.64
Transmembrane Helix	35	53	0.88
Cytoplasmic	54	88	0.86
Transmembrane Helix	89	108	0.95
Non-Cytoplasmic	109	123	0.87
Transmembrane Helix	124	143	0.93
Cytoplasmic	144	151	0.80
Transmembrane Helix	152	173	0.92
Non-Cytoplasmic	174	193	0.91
Transmembrane Helix	194	216	0.93
Cytoplasmic	217	235	0.96
Transmembrane Helix	236	257	0.94
Non-Cytoplasmic	258	280	0.86
Transmembrane Helix	281	302	0.83
Cytoplasmic	303	333	0.86
Transmembrane Helix	334	355	0.87
Non-Cytoplasmic	356	359	0.64
Transmembrane Helix	360	381	0.90
Cytoplasmic	382	388	0.85
Transmembrane Helix	389	408	0.95
Non-Cytoplasmic	409	409	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNIWSKEET LWSFALYGTA VGAGTLFLPI QLGSAGAVVL FITALVAWPL TYWPHKALCQ  60
   61 FILSSKTSAG EGITGAVTHY YGKKIGNLIT TLYFIAFFVV VLIYAVAITN SLTEQLAKHM 120
  121 VIDLRIRMLV SLGVVLILNL IFLMGRHATI RVMGFLVFPL IAYFLFLSIY LVGSWQPDLL 180
  181 TTQVEFNQNT LHQIWISIPV MVFAFSHTPI ISTFAIDRRE KYGEHAMDKC KKIMKVAYLI 240
  241 ICISVLFFVF SCLLSIPPSY IEAAKEEGVT ILSALSMLPN APAWLSISGI IVAVVAMSKS 300
  301 FLGTYFGVIE GATEVVKTTL QQVGVKKSRA FNRALSIMLV SLITFIVCCI NPNAISMIYA 360
  361 ISGPLIAMIL FIMPTLSTYL IPALKPWRSI GNLITLIVGI LCVSVMFFS