YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YP03_LACPL, Y250...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.67
Transmembrane Helix	5	24	0.73
Cytoplasmic	25	30	0.74
Transmembrane Helix	31	48	0.92
Non-Cytoplasmic	49	56	0.66
Transmembrane Helix	57	76	0.86
Cytoplasmic	77	86	0.77
Transmembrane Helix	87	107	0.87
Non-Cytoplasmic	108	113	0.86
Transmembrane Helix	114	135	0.93
Cytoplasmic	136	148	0.93
Transmembrane Helix	149	169	0.92
Non-Cytoplasmic	170	177	0.72
Transmembrane Helix	178	196	0.96
Cytoplasmic	197	205	0.91
Transmembrane Helix	206	228	0.88
Non-Cytoplasmic	229	233	0.78
Transmembrane Helix	234	255	0.91
Cytoplasmic	256	262	0.95
Transmembrane Helix	263	283	0.94
Non-Cytoplasmic	284	285	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGILIALIPA IAWGSIGLIS GRMGGTARQQ TLGMTMGALV FGLALWAVEQ PTLTSKIWLI  60
   61 GIVSGLFWSI GQGQQFTSMK AVGISRTTPI STGMQLVANA LAGVLLFNEW HGNMYWIGSA 120
  121 SVIVLIAGAV LTSLTDKTDP NRSASENWGV GIRALILSTI GYAGYTIVVH YGNVNAQAVV 180
  181 MPQAVGMLLG ALIWSFKDKP WVVKATYRNI VTGLVWGIGN LFMFMAMAQI GQAVAYSLSQ 240
  241 MGIVISTFGS IYLLGEHKTK REMVYVVIGS ILVIVGGVAL SLMKA