YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YOHD_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLNTLISQY GYAALVIGSL AEGETVTLLG GVAAHQGLLK FPLVVLSVAL GGMIGDQVLY  60
   61 LCGRRFGGKL LRRFSKHQDK IERAQKLIQR HPYLFVIGTR FMYGFRVIGP TLIGASQLPP 120
  121 KIFLPLNILG AFAWALIFTT IGYAGGQVIA PWLHNLDQHL KHWVWLILVV VLVVGVRWWL 180
  181 KRRGKKKPDH QA

Type	Start	End	Confidence
Cytoplasmic	1	9	0.82
Transmembrane Helix	10	33	0.77
Non-Cytoplasmic	34	40	0.71
Transmembrane Helix	41	63	0.87
Cytoplasmic	64	122	0.91
Transmembrane Helix	123	145	0.86
Non-Cytoplasmic	146	161	0.80
Transmembrane Helix	162	180	0.97
Cytoplasmic	181	192	0.97