YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YNJC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.90
Transmembrane Helix	10	32	0.93
Non-Cytoplasmic	33	53	0.88
Transmembrane Helix	54	80	0.87
Cytoplasmic	81	91	0.89
Transmembrane Helix	92	112	0.91
Non-Cytoplasmic	113	132	0.82
Transmembrane Helix	133	155	0.84
Cytoplasmic	156	179	0.85
Transmembrane Helix	180	202	0.86
Non-Cytoplasmic	203	238	0.87
Transmembrane Helix	239	260	0.95
Cytoplasmic	261	280	0.94
Transmembrane Helix	281	305	0.91
Non-Cytoplasmic	306	313	0.94
Transmembrane Helix	314	337	0.90
Cytoplasmic	338	345	0.91
Transmembrane Helix	346	367	0.94
Non-Cytoplasmic	368	378	0.75
Transmembrane Helix	379	399	0.89
Cytoplasmic	400	426	0.91
Transmembrane Helix	427	449	0.86
Non-Cytoplasmic	450	481	0.90
Transmembrane Helix	482	505	0.89
Cytoplasmic	506	511	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPLRYALI FLLWAMVAVI YAPLIPAALT LISPALSLTH WQALFADPQL PQALLATLVS  60
   61 TTIAAVGALL IALLVIVALW PGPKWQRMCA RLPWLLAIPH VAFATSALLL FADGGLLYDY 120
  121 FPYFTPPMDR FGIGLGLTLA VKESAFLLWI LAAVLSEKWL LQQVIVLDSL GYSRWQCLNW 180
  181 LLLPSVAPAL AMAMLAIVAW SLSVVDVAII LGPGNPPTLA VISWQWLTQG DIDQQTKGAL 240
  241 ASLLLMLLLA AYVLLSYLLW RSWRRTIPRV DGVRKPATPL LPGNTLAIFL PLTGVLCVVL 300
  301 LAILADQSTI NSEALINSLT MGLVATFIAL LLLLLWLEWG PQRRQLWLWL PILLPALPLV 360
  361 AGQYTLALWL KLDGSWTAVV WGHLLWVMPW MLFILQPAWQ RIDSRLILIA QTLGWSRAKI 420
  421 FFYVKCPLML RPVLIAFAVG FAVGIAQYMP TLWLGAGRFP TLTTEAVALS SGGSNGILAA 480
  481 QALWQLLLPL IIFALTALVA KWVGYVRQGL R