YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YNFM_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.96
Transmembrane Helix	37	59	0.88
Non-Cytoplasmic	60	72	0.83
Transmembrane Helix	73	92	0.93
Cytoplasmic	93	102	0.78
Transmembrane Helix	103	122	0.93
Non-Cytoplasmic	123	127	0.76
Transmembrane Helix	128	149	0.93
Cytoplasmic	150	156	0.87
Transmembrane Helix	157	179	0.89
Non-Cytoplasmic	180	188	0.81
Transmembrane Helix	189	211	0.90
Cytoplasmic	212	239	0.97
Transmembrane Helix	240	262	0.91
Non-Cytoplasmic	263	269	0.83
Transmembrane Helix	270	289	0.94
Cytoplasmic	290	300	0.86
Transmembrane Helix	301	323	0.85
Non-Cytoplasmic	324	327	0.65
Transmembrane Helix	328	351	0.86
Cytoplasmic	352	364	0.86
Transmembrane Helix	365	385	0.92
Non-Cytoplasmic	386	391	0.77
Transmembrane Helix	392	412	0.91
Cytoplasmic	413	417	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRTTTVDGA PASDTDKQSI SQPNQFIKRG TPQFMRVTLA LFSAGLATFA LLYCVQPILP  60
   61 VLSQEFGLTP ANSSISLSIS TAMLAIGLLF TGPLSDAIGR KPVMVTALLL ASICTLLSTM 120
  121 MTSWHGILIM RALIGLSLSG VAAVGMTYLS EEIHPSFVAF SMGLYISGNS IGGMSGRLIS 180
  181 GVFTDFFNWR IALAAIGCFA LASALMFWKI LPESRHFRPT SLRPKTLFIN FRLHWRDRGL 240
  241 PLLFAEGFLL MGSFVTLFNY IGYRLMLSPW HVSQAVVGLL SLAYLTGTWS SPKAGTMTTR 300
  301 YGRGPVMLFS TGVMLFGLLM TLFSSLWLIF AGMLLFSAGF FAAHSVASSW IGPRAKRAKG 360
  361 QASSLYLFSY YLGSSIAGTL GGVFWHNYGW NGVGAFIALM LVIALLVGTR LHRRLHA