YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|126193841, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.95
Transmembrane Helix	7	27	0.87
Non-Cytoplasmic	28	32	0.71
Transmembrane Helix	33	52	0.90
Cytoplasmic	53	67	0.80
Transmembrane Helix	68	87	0.94
Non-Cytoplasmic	88	98	0.78
Transmembrane Helix	99	120	0.91
Cytoplasmic	121	128	0.75
Transmembrane Helix	129	149	0.91
Non-Cytoplasmic	150	164	0.82
Transmembrane Helix	165	187	0.84
Cytoplasmic	188	203	0.81
Transmembrane Helix	204	223	0.91
Non-Cytoplasmic	224	228	0.84
Transmembrane Helix	229	252	0.92
Cytoplasmic	253	280	0.83
Transmembrane Helix	281	304	0.70
Non-Cytoplasmic	305	333	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRPRFLPDN FTLALIATVL LATFLPCSGQ TAVVFEWVTN IGIGLLFFLH GAKLSRQAII  60
   61 AGMTHWRLHL LVFACTFVMF PLLGLALKPA LSPMVTPELY LGILFLCALP ATVQSSIAFT 120
  121 SLARGNVPAA VCSASVSSLL GVFLTPLLVK LLLGAEGETG NALDAIGKIT LQLLVPFIAG 180
  181 QVLRRWIGAW VERNKPVLRY VDQGSILLVV YTAFSAAVIQ GLWHEVPWLA LLGLTVACCV 240
  241 ILALALVLTT VLARRLGFSK EDEITIVFCG SKKSLATGVP MAKVLFATSA VGPMVLPLML 300
  301 FHQIQLMVCA VLAQRYARRR DDAAAALAEA PSR