YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YJJL_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.95
Transmembrane Helix	39	56	0.89
Non-Cytoplasmic	57	73	0.79
Transmembrane Helix	74	97	0.80
Cytoplasmic	98	107	0.73
Transmembrane Helix	108	127	0.88
Non-Cytoplasmic	128	132	0.70
Transmembrane Helix	133	155	0.75
Cytoplasmic	156	167	0.87
Transmembrane Helix	168	190	0.87
Non-Cytoplasmic	191	196	0.73
Transmembrane Helix	197	217	0.94
Cytoplasmic	218	258	0.98
Transmembrane Helix	259	280	0.91
Non-Cytoplasmic	281	296	0.91
Transmembrane Helix	297	317	0.93
Cytoplasmic	318	332	0.83
Transmembrane Helix	333	352	0.93
Non-Cytoplasmic	353	358	0.76
Transmembrane Helix	359	381	0.91
Cytoplasmic	382	392	0.80
Transmembrane Helix	393	415	0.89
Non-Cytoplasmic	416	422	0.78
Transmembrane Helix	423	443	0.97
Cytoplasmic	444	453	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKENITIDP RSSFTPSSSA DIPVPPDGLV QRSTRIKRIQ TTAMLLLFFA AVINYLDRSS  60
   61 LSVANLTIRE ELGLSATEIG ALLSVFSLAY GIAQLPCGPL LDRKGPRLML GLGMFFWSLF 120
  121 QAMSGMVHNF TQFVLVRIGM GIGEAPMNPC GVKVINDWFN IKERGRPMGF FNAASTIGVA 180
  181 VSPPILAAMM LVMGWRGMFI TIGVLGIFLA IGWYMLYRNR EHVELTAVEQ AYLNAGSVNA 240
  241 RRDPLSFAEW RSLFRNRTMW GMMLGFSGIN YTAWLYLAWL PGYLQTAYNL DLKSTGLMAA 300
  301 IPFLFGAAGM LVNGYVTDWL VKGGMAPIKS RKICIIAGMF CSAAFTLIVP QATTSMTAVL 360
  361 LIGMALFCIH FAGTSCWGLI HVAVASRMTA SVGSIQNFAS FICASFAPII TGFIVDTTHS 420
  421 FRLALIICGC VTAAGALAYI FLVRQPINDP RKD