YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YJHF_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.46
Transmembrane Helix	17	43	0.76
Cytoplasmic	44	53	0.61
Transmembrane Helix	54	76	0.82
Non-Cytoplasmic	77	100	0.77
Transmembrane Helix	101	126	0.86
Cytoplasmic	127	133	0.78
Transmembrane Helix	134	154	0.89
Non-Cytoplasmic	155	172	0.84
Transmembrane Helix	173	193	0.92
Cytoplasmic	194	227	0.89
Transmembrane Helix	228	248	0.96
Non-Cytoplasmic	249	264	0.78
Transmembrane Helix	265	286	0.92
Cytoplasmic	287	301	0.83
Transmembrane Helix	302	322	0.90
Non-Cytoplasmic	323	333	0.65
Transmembrane Helix	334	353	0.67
Cytoplasmic	354	358	0.51
Transmembrane Helix	359	381	0.86
Non-Cytoplasmic	382	386	0.62
Transmembrane Helix	387	407	0.87
Cytoplasmic	408	423	0.61
Transmembrane Helix	424	447	0.91
Non-Cytoplasmic	448	449	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLIIVVAGI ALLLLLTIKI KLNTFVSLII VSIAVAIASG MDLSKVVTSV ESGLGGTLGH  60
   61 IGLIFGFGVM LGRLLADAGG AQRIALTMLN YFGKNKLDWA VVCSAFIVGI ALFFEVGLIL 120
  121 LVPILFAIAR EAKISPMFMC VPMLSGLLVA HGFLPPHPGP TVIAREYGAD VGLVLIYGII 180
  181 VGIPTFILCG PVLNKFCQRI IPDAFKKEGN IASLGATRRF SESEMPGFGI SFLTAMLPVI 240
  241 LMAVVTIIQM THAKSAADSG LFYNVILFLG NSTIAMLISL LFAIYTMGLG RGKTIPDLMD 300
  301 SCGKAIAGIA GLLLIIGGGG AFKQVLIDSG VGQYISTLVS GMDINPILMA WGVAAFLRIC 360
  361 LGSATVAAIS TAGLVIPLLA VHPNTNLALI TLATGAGSCI CSHVNDASFW MIKDFFGLTT 420
  421 KETLLSWTLM STLLSISGLI FILLASLVL