YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YJGN_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQVINEMDV PSHSFVFHGT GERYFLICVV NVLLTIITLG IYLPWALMKC KRYLYANMEV  60
   61 NGQRFSYGIT GGNVFVSCLF FVFFYFAILM TVSADMPLVG CVLTLLLLVL LIFMAAKGLR 120
  121 HQALMTSLNG VRFSFNCSMK GFWWVTFFLP ILMAIGMGTV FFISTKMLPA NSSSSVIISM 180
  181 VLMAIVGIVS IGIFNGTLYS LVMSFLWSNT SFGIHRFKVK LDTTYCIKYA ILAFLALLPF 240
  241 LAVAGYIIFD QILNAYDSSV YANDDIENLQ QFMEMQRKMI IAQLIYYFGI AVSTSYLTVS 300
  301 LRNHFMSNLS LNDGRIRFRL TLTYHGMLYR MCALVVISGI TGGLAYPLLK IWMIDWQAKN 360
  361 TYLLGDLDDL PLINKEEQPD KGFLASISRG VMPSLPFL

Type	Start	End	Confidence
Non-Cytoplasmic	1	23	0.90
Transmembrane Helix	24	46	0.94
Cytoplasmic	47	64	0.90
Transmembrane Helix	65	88	0.91
Non-Cytoplasmic	89	95	0.76
Transmembrane Helix	96	119	0.88
Cytoplasmic	120	140	0.89
Transmembrane Helix	141	163	0.94
Non-Cytoplasmic	164	175	0.82
Transmembrane Helix	176	207	0.79
Cytoplasmic	208	224	0.90
Transmembrane Helix	225	249	0.89
Non-Cytoplasmic	250	279	0.95
Transmembrane Helix	280	305	0.81
Cytoplasmic	306	325	0.91
Transmembrane Helix	326	348	0.91
Non-Cytoplasmic	349	398	0.94