YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YJDL_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.95
Transmembrane Helix	10	32	0.77
Non-Cytoplasmic	33	45	0.72
Transmembrane Helix	46	67	0.91
Cytoplasmic	68	74	0.73
Transmembrane Helix	75	93	0.94
Non-Cytoplasmic	94	99	0.82
Transmembrane Helix	100	120	0.90
Cytoplasmic	121	138	0.88
Transmembrane Helix	139	161	0.90
Non-Cytoplasmic	162	167	0.69
Transmembrane Helix	168	188	0.93
Cytoplasmic	189	207	0.89
Transmembrane Helix	208	229	0.92
Non-Cytoplasmic	230	235	0.79
Transmembrane Helix	236	255	0.93
Cytoplasmic	256	262	0.94
Transmembrane Helix	263	282	0.93
Non-Cytoplasmic	283	307	0.91
Transmembrane Helix	308	329	0.93
Cytoplasmic	330	340	0.91
Transmembrane Helix	341	361	0.95
Non-Cytoplasmic	362	371	0.76
Transmembrane Helix	372	391	0.90
Cytoplasmic	392	405	0.72
Transmembrane Helix	406	428	0.86
Non-Cytoplasmic	429	451	0.90
Transmembrane Helix	452	473	0.92
Cytoplasmic	474	485	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTPSQPRAI YYIVAIQIWE YFSFYGMRAL LILYLTHQLG FDDNHAISLF SAYASLVYVT  60
   61 PILGGWLADR LLGNRTAVIA GALLMTLGHV VLGIDTNSTF SLYLALAIII CGYGLFKSNI 120
  121 SCLLGELYDE NDHRRDGGFS LLYAAGNIGS IAAPIACGLA AQWYGWHVGF ALAGGGMFIG 180
  181 LLIFLSGHRH FQSTRSMDKK ALTSVKFALP VWSWLVVMLC LAPVFFTLLL ENDWSGYLLA 240
  241 IVCLIAAQII ARMMIKFPEH RRALWQIVLL MFVGTLFWVL AQQGGSTISL FIDRFVNRQA 300
  301 FNIEVPTALF QSVNAIAVML AGVVLAWLAS PESRGNSTLR VWLKFAFGLL LMACGFMLLA 360
  361 FDARHAAADG QASMGVMISG LALMGFAELF IDPVAIAQIT RLKMSGVLTG IYMLATGAVA 420
  421 NWLAGVVAQQ TTESQISGMA IAAYQRFFSQ MGEWTLACVA IIVVLAFATR FLFSTPTNMI 480
  481 QESND