YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIEO_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.97
Transmembrane Helix	10	30	0.87
Non-Cytoplasmic	31	46	0.76
Transmembrane Helix	47	70	0.87
Cytoplasmic	71	77	0.88
Transmembrane Helix	78	98	0.92
Non-Cytoplasmic	99	104	0.74
Transmembrane Helix	105	125	0.93
Cytoplasmic	126	133	0.92
Transmembrane Helix	134	155	0.92
Non-Cytoplasmic	156	161	0.78
Transmembrane Helix	162	182	0.93
Cytoplasmic	183	195	0.91
Transmembrane Helix	196	215	0.92
Non-Cytoplasmic	216	222	0.72
Transmembrane Helix	223	244	0.94
Cytoplasmic	245	263	0.89
Transmembrane Helix	264	285	0.91
Non-Cytoplasmic	286	292	0.78
Transmembrane Helix	293	314	0.91
Cytoplasmic	315	324	0.85
Transmembrane Helix	325	345	0.92
Non-Cytoplasmic	346	352	0.73
Transmembrane Helix	353	374	0.91
Cytoplasmic	375	393	0.85
Transmembrane Helix	394	414	0.90
Non-Cytoplasmic	415	430	0.82
Transmembrane Helix	431	453	0.90
Cytoplasmic	454	475	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDKKKRSMA GLPWIAAMAF FMQALDATIL NTALPAIAHS LNRSPLAMQS AIISYTLTVA  60
   61 MLIPVSGWLA DRFGTRRIFT LAVSLFTLGS LACALSNSLP QLVVFRVIQG IGGAMMMPVA 120
  121 RLALLRAYPR NELLPVLNFV AMPGLVGPIL GPVLGGVLVT WATWHWIFLI NIPIGIAGLL 180
  181 YARKHMPNFT TARRRFDITG FLLFGLSLVL FSSGIELFGE KIVASWIALT VIVTSIGLLL 240
  241 LYILHARRTP NPLISLDLFK TRTFSIGIVG NIATRLGTGC VPFLMPLMLQ VGFGYQAFIA 300
  301 GCMMAPTALG SIIAKSMVTQ VLRRLGYRHT LVGITVIIGL MIAQFSLQSP AMAIWMLILP 360
  361 LFILGMAMST QFTAMNTITL ADLTDDNASS GNSVLAVTQQ LSISLGVAVS AAVLRVYEGM 420
  421 EGTTTVEQFH YTFITMGIIT VASAAMFMLL KTTDGNNLIK RQRKSKPNRV PSESE