YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIDE_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	3	0.66
Transmembrane Helix	4	24	0.85
Cytoplasmic	25	28	0.58
Transmembrane Helix	29	49	0.90
Non-Cytoplasmic	50	64	0.53
Transmembrane Helix	65	86	0.85
Cytoplasmic	87	92	0.58
Transmembrane Helix	93	115	0.88
Non-Cytoplasmic	116	159	0.76
Transmembrane Helix	160	178	0.94
Cytoplasmic	179	370	0.97
Transmembrane Helix	371	391	0.92
Non-Cytoplasmic	392	399	0.63
Transmembrane Helix	400	419	0.89
Cytoplasmic	420	431	0.72
Transmembrane Helix	432	452	0.85
Non-Cytoplasmic	453	464	0.81
Transmembrane Helix	465	485	0.93
Cytoplasmic	486	492	0.79
Transmembrane Helix	493	513	0.83
Non-Cytoplasmic	514	527	0.65
Transmembrane Helix	528	550	0.76
Cytoplasmic	551	553	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDIALTVSI LALVAVVGLF IGNVKFRGIG LGIGGVLFGG IIVGHFVSQA GMTLSSDMLH  60
   61 VIQEFGLILF VYTIGIQVGP GFFASLRVSG LRLNLFAVLI VIIGGLVTAI LHKLFDIPLP 120
  121 VVLGIFSGAV TNTPALGAGQ QILRDLGTPM EMVDQMGMSY AMAYPFGICG ILFTMWMLRV 180
  181 IFRVNVETEA QQHESSRTNG GALIKTINIR VENPNLHDLA IKDVPILNGD KIICSRLKRE 240
  241 ETLKVPSPDT IIQLGDLLHL VGQPADLHNA QLVIGQEVDT SLSTKGTDLR VERVVVTNEN 300
  301 VLGKRIRDLH FKERYDVVIS RLNRAGVELV ASGDISLQFG DILNLVGRPS AIDAVANVLG 360
  361 NAQQKLQQVQ MLPVFIGIGL GVLLGSIPVF VPGFPAALKL GLAGGPLIMA LILGRIGSIG 420
  421 KLYWFMPPSA NLALRELGIV LFLSVVGLKS GGDFVNTLVN GEGLSWIGYG ALITAVPLIT 480
  481 VGILARMLAK MNYLTMCGML AGSMTDPPAL AFANNLHPTS GAAALSYATV YPLVMFLRII 540
  541 TPQLLAVLFW SIG