YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YICG_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLHILYLVG ITAEAMTGAL AAGRRRMDTF GVIIIATATA IGGGSVRDIL LGHYPLGWVK  60
   61 HPEYVIIVAT AAVLTTIVAP VMPYLRKVFL VLDALGLVVF SIIGAQVALD MGHGPIIAVV 120
  121 AAVTTGVFGG VLRDMFCKRI PLVFQKELYA GVSFASAVLY IALQHYVSNH DVVIISTLVF 180
  181 GFFARLLALR LKLGLPVFYY SHEGH

Type	Start	End	Confidence
Cytoplasmic	1	29	0.66
Transmembrane Helix	30	51	0.90
Non-Cytoplasmic	52	63	0.80
Transmembrane Helix	64	82	0.93
Cytoplasmic	83	88	0.80
Transmembrane Helix	89	109	0.93
Non-Cytoplasmic	110	114	0.83
Transmembrane Helix	115	136	0.90
Cytoplasmic	137	147	0.77
Transmembrane Helix	148	164	0.95
Non-Cytoplasmic	165	171	0.69
Transmembrane Helix	172	189	0.94
Cytoplasmic	190	205	0.89