YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIAH_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.90
Transmembrane Helix	10	30	0.90
Non-Cytoplasmic	31	47	0.87
Transmembrane Helix	48	67	0.94
Cytoplasmic	68	75	0.93
Transmembrane Helix	76	97	0.93
Non-Cytoplasmic	98	114	0.87
Transmembrane Helix	115	134	0.92
Cytoplasmic	135	142	0.69
Transmembrane Helix	143	160	0.91
Non-Cytoplasmic	161	171	0.80
Transmembrane Helix	172	194	0.77
Cytoplasmic	195	201	0.89
Transmembrane Helix	202	224	0.89
Non-Cytoplasmic	225	234	0.92
Transmembrane Helix	235	255	0.94
Cytoplasmic	256	268	0.82
Transmembrane Helix	269	288	0.88
Non-Cytoplasmic	289	300	0.78
Transmembrane Helix	301	321	0.94
Cytoplasmic	322	331	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPKIYWIDN LRGIACLMVV MIHTTTWYVT NAHSVSPVTW DIANVLNSAS RVSVPLFFMI  60
   61 SGYLFFGERS AQPRHFLRIG LCLIFYSAIA LLYIALFTSI NMELALKNLL QKPVFYHLWF 120
  121 FFAIAVIYLV SPLIQVKNVG GKMLLVLMAV IGIIANPNTV PQKIDGFEWL PINLYINGDT 180
  181 FYYILYGMLG RAIGMMDTQH KALSWVSAAL FATGVFIISR GTLYELQWRG NFADTWYLYC 240
  241 GPMVFICAIA LLTLVKNTLD TRTIRGLGLI SRHSLGIYGF HALIIHALRT RGIELKNWPI 300
  301 LDIIWIFCAT LAASLLLSML VQRIDRNRLV S