YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Y1857_THEMA, CNP...
Protein type:	Transmembrane
Type Confidence:	0.45
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLWYIVAGA GGLLIGYLIA NYQINQKLRK AKEDAQTIIE KAEKEANEIK KKAIIEGREE  60
   61 VHRLREEFEK ERSRREEELR ALEERLLKRE ELLTRKEENL EKREQQVEEL KANLEEKMRE 120
  121 VEEKEKRIDE ELKRLAGMTV EEARELILEE ARQRYEHDLA KLYKEMKEQV EEEAEKEAKK 180
  181 VIAFAVQRYA PDYVGEITVS TVSLPSDDMK GRIIGREGRN IRTFEKITGV DLIIDDTPEV 240
  241 VVLSCFNPLR REIARITLEK LVADGRIHPA RIEEMYEKAK QEVEKAIKEA GQEATFKAGV 300
  301 MGLHPELVKL LGKLKYRTSY GQNVLNHSIE VALLAGYMAS ELGLNADKAR RGGLLHDIGK 360
  361 AVDQELEGSH TTIGAELARR YGEKEDIINM ILSHHGEEEP MTPEAVLVAA ADALSAARPG 420
  421 ARRESLENYI KRLMKLEEIA KSFKYVEKAY AIQAGREIRV IVEPDKVDDA LAEKLAYDIS 480
  481 KKIEEELEYP GVLKVVVIRE KRSVAYAK

Type	Start	End	Confidence
Cytoplasmic	1	2	0.30
Transmembrane Helix	3	21	0.40
Non-Cytoplasmic	22	508	0.85