YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YHIP_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	23	0.80
Transmembrane Helix	24	42	0.76
Non-Cytoplasmic	43	51	0.72
Transmembrane Helix	52	73	0.92
Cytoplasmic	74	82	0.75
Transmembrane Helix	83	100	0.94
Non-Cytoplasmic	101	106	0.72
Transmembrane Helix	107	125	0.92
Cytoplasmic	126	144	0.87
Transmembrane Helix	145	166	0.94
Non-Cytoplasmic	167	173	0.80
Transmembrane Helix	174	193	0.96
Cytoplasmic	194	213	0.88
Transmembrane Helix	214	233	0.95
Non-Cytoplasmic	234	237	0.86
Transmembrane Helix	238	258	0.91
Cytoplasmic	259	267	0.91
Transmembrane Helix	268	286	0.96
Non-Cytoplasmic	287	315	0.91
Transmembrane Helix	316	337	0.91
Cytoplasmic	338	348	0.91
Transmembrane Helix	349	371	0.91
Non-Cytoplasmic	372	384	0.81
Transmembrane Helix	385	408	0.85
Cytoplasmic	409	415	0.76
Transmembrane Helix	416	437	0.90
Non-Cytoplasmic	438	456	0.90
Transmembrane Helix	457	479	0.90
Cytoplasmic	480	489	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTTTPMGML QQPRPFFMIF FVELWERFGY YGVQGVLAVF FVKQLGFSQE QAFVTFGAFA  60
   61 ALVYGLISIG GYVGDHLLGT KRTIVLGALV LAIGYFMTGM SLLKPDLIFI ALGTIAVGNG 120
  121 LFKANPASLL SKCYPPKDPR LDGAFTLFYM SINIGSLIAL SLAPVIADRF GYSVTYNLCG 180
  181 AGLIIALLVY IACRGMVKDI GSEPDFRPMS FSKLLYVLLG SVVMIFVCAW LMHNVEVANL 240
  241 VLIVLSIVVT IIFFRQAFKL DKTGRNKMFV AFVLMLEAVV FYILYAQMPT SLNFFAINNV 300
  301 HHEILGFSIN PVSFQALNPF WVVLASPILA GIYTHLGNKG KDLSMPMKFT LGMFMCSLGF 360
  361 LTAAAAGMWF ADAQGLTSPW FIVLVYLFQS LGELFISALG LAMIAALVPQ HLMGFILGMW 420
  421 FLTQAAAFLL GGYVATFTAV PDNITDPLET LPVYTNVFGK IGLVTLGVAV VMLLMVPWLK 480
  481 RMIATPESH