YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YHGE_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.89
Transmembrane Helix	12	32	0.94
Non-Cytoplasmic	33	38	0.85
Transmembrane Helix	39	59	0.95
Cytoplasmic	60	65	0.89
Transmembrane Helix	66	86	0.93
Non-Cytoplasmic	87	98	0.94
Transmembrane Helix	99	118	0.94
Cytoplasmic	119	137	0.92
Transmembrane Helix	138	160	0.93
Non-Cytoplasmic	161	178	0.89
Transmembrane Helix	179	200	0.89
Cytoplasmic	201	212	0.87
Transmembrane Helix	213	236	0.91
Non-Cytoplasmic	237	246	0.74
Transmembrane Helix	247	268	0.91
Cytoplasmic	269	283	0.96
Transmembrane Helix	284	306	0.90
Non-Cytoplasmic	307	317	0.89
Transmembrane Helix	318	340	0.89
Cytoplasmic	341	350	0.86
Transmembrane Helix	351	373	0.85
Non-Cytoplasmic	374	574	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNVELSPAT RWGMIATGLL QGLVCYLLIA WLSGKNHSWI VYGVPATVAF SSVLLFSVIS  60
   61 FKQKRLWGWL ALVFIATLGM SGWLKWQTDG MNPWRAEKAL WDFGCYLLLM AMLLLPWIQQ 120
  121 SLRIRNDSSR YRYFYQSVWH NVLILLVIFL ANGLTWLVLL LWSELFKLVG ITFFNTLFFA 180
  181 TDWFIYLTLG LVTALAVILA RTQSRLIDSI QKLFTLIATG LLPLVSLLTL MFIITLPFTG 240
  241 LSAISRHISA AGLLLTLAFL QLILMAIVRD PQKASLPWTG PLRCLIKTAL LVAPLYVFVA 300
  301 AWALWLRVAQ YGWTVDRLQG VLAVLVLLVW SLGYFVSIVW RKGQNPVVLQ GKVNLAVSLL 360
  361 VLVILVLLNS PVLDSMRISV NSHMARYQSG KNTSDQVTIY MLEQSGRYGR AALESLKSDA 420
  421 GFMKDPKRAR DLLMALDGEQ HLQQQVSEKV LADNVLIAPG SVKPDATFWS ALIQDRYNVM 480
  481 TCIEKDACVL VEQDLNSDGQ AERILFAFND DRVIVYGFDS DRKEWDALDM SLLPNEITKE 540
  541 KLLTAAKDGK LGTKPKAWRD LVVDGERLNV NLNE