YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YHAO_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.95
Transmembrane Helix	38	56	0.95
Non-Cytoplasmic	57	63	0.66
Transmembrane Helix	64	82	0.93
Cytoplasmic	83	110	0.87
Transmembrane Helix	111	130	0.94
Non-Cytoplasmic	131	150	0.84
Transmembrane Helix	151	171	0.87
Cytoplasmic	172	184	0.81
Transmembrane Helix	185	206	0.92
Non-Cytoplasmic	207	221	0.87
Transmembrane Helix	222	243	0.91
Cytoplasmic	244	261	0.88
Transmembrane Helix	262	281	0.92
Non-Cytoplasmic	282	317	0.89
Transmembrane Helix	318	339	0.91
Cytoplasmic	340	362	0.91
Transmembrane Helix	363	382	0.95
Non-Cytoplasmic	383	388	0.73
Transmembrane Helix	389	411	0.91
Cytoplasmic	412	420	0.91
Transmembrane Helix	421	442	0.93
Non-Cytoplasmic	443	443	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIASNKGVI ADASTPAGRA GMSESEWREA IKFDSTDTGW VIMSIGMAIG AGIVFLPVQV  60
   61 GLMGLWVFLL SSVIGYPAMY LFQRLFINTL AESPECKDYP SVISGYLGKN WGILLGALYF 120
  121 VMLVIWMFVY STAITNDSAS YLHTFGVTEG LLSDSPFYGL VLICILVAIS SRGEKLLFKI 180
  181 STGMVLTKLL VVAALGVSMV GMWHLYNVGS LPPLGLLVKN AIITLPFTLT SILFIQTLSP 240
  241 MVISYRSREK SIEVARHKAL RAMNIAFGIL FVTVFFYAVS FTLAMGHDEA VKAYEQNISA 300
  301 LAIAAQFISG DGAAWVKVVS VILNIFAVMT AFFGVYLGFR EATQGIVMNI LRRKMPAEKI 360
  361 NENLVQRGIM IFAILLAWSA IVLNAPVLSF TSICSPIFGM VGCLIPAWLV YKVPALHKYK 420
  421 GMSLYLIIVT GLLLCVSPFL AFS