YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YHAM_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDSTLNPLW QRYILAVQEE VKPALGCTEP ISLALAAAVA AAELEGPVER VEAWVSPNLM  60
   61 KNGLGVTVPG TGMVGLPIAA ALGALGGNAN AGLEVLKDAT AQAIADAKAL LAAGKVSVKI 120
  121 QEPCDEILFS RAKVWNGEKW ACVTIVGGHT NIVHIETHDG VVFTQQACVA EGEQESPLTV 180
  181 LSRTTLAEIL KFVNEVPFAA IRFILDSAKL NCALSQEGLS GKWGLHIGAT LEKQCERGLL 240
  241 AKDLSSSIVI RTSAASDARM GGATLPAMSN SGSGNQGITA TMPVVVVAEH FGADDERLAR 300
  301 ALMLSHLSAI YIHNQLPRLS ALCAATTAAM GAAAGMAWLV DGRYETISMA ISSMIGDVSG 360
  361 MICDGASNSC AMKVSTSASA AWKAVLMALD DTAVTGNEGI VAHDVEQSIA NLCALASHSM 420
  421 QQTDRQIIEI MASKAR

Type	Start	End	Confidence
Non-Cytoplasmic	1	318	0.58
Transmembrane Helix	319	340	0.65
Cytoplasmic	341	436	0.49