YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YGHQ_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGFNIKHWF ADGAFRTIIR NSAWLGSSNV VSALLGLLAL SCAGKGMTPA MFGVLVIVQS  60
   61 YAKSISDFIK FQTWQLVVQY GTPALTNNNP QQFRNVVSFS FSLDIVSGAV AIVGGIALLP 120
  121 FLSHSLGLDD QSFWLAALYC TLIPSMASST PTGILRAVDR FDLIAVQQAT KPFLRAAGSV 180
  181 VAWYFDFGFA GFVIAWYVSN LVGGTMYWWF AARELRRRNI HNAFKLNLFE SARYIKGAWS 240
  241 FVWSTNIAHS IWSARNSCST VLVGIVLGPA AAGLFKIAMT FFDAAGTPAG LLGKSFYPEV 300
  301 MRLDPRTTRP WLLGVKSGLL AGGIGILVAL AVLIVGKPLI SLVFGVKYLE AYDLI

Type	Start	End	Confidence
Cytoplasmic	1	20	0.88
Transmembrane Helix	21	43	0.85
Non-Cytoplasmic	44	100	0.74
Transmembrane Helix	101	123	0.88
Cytoplasmic	124	132	0.64
Transmembrane Helix	133	155	0.84
Non-Cytoplasmic	156	187	0.82
Transmembrane Helix	188	211	0.88
Cytoplasmic	212	257	0.72
Transmembrane Helix	258	275	0.76
Non-Cytoplasmic	276	276	0.24
Transmembrane Helix	277	292	0.50
Cytoplasmic	293	311	0.51
Transmembrane Helix	312	336	0.82
Non-Cytoplasmic	337	355	0.55