YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YGFU_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.94
Transmembrane Helix	33	53	0.92
Non-Cytoplasmic	54	61	0.87
Transmembrane Helix	62	83	0.92
Cytoplasmic	84	90	0.76
Transmembrane Helix	91	110	0.94
Non-Cytoplasmic	111	117	0.75
Transmembrane Helix	118	139	0.92
Cytoplasmic	140	147	0.74
Transmembrane Helix	148	167	0.93
Non-Cytoplasmic	168	179	0.79
Transmembrane Helix	180	199	0.91
Cytoplasmic	200	204	0.78
Transmembrane Helix	205	225	0.88
Non-Cytoplasmic	226	254	0.81
Transmembrane Helix	255	278	0.86
Cytoplasmic	279	331	0.87
Transmembrane Helix	332	352	0.90
Non-Cytoplasmic	353	359	0.70
Transmembrane Helix	360	381	0.92
Cytoplasmic	382	390	0.86
Transmembrane Helix	391	410	0.93
Non-Cytoplasmic	411	422	0.77
Transmembrane Helix	423	443	0.92
Cytoplasmic	444	482	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAIDSQLPS SSGQDRPTDE VDRILSPGKL IILGLQHVLV MYAGAVAVPL MIGDRLGLSK  60
   61 EAIAMLISSD LFCCGIVTLL QCIGIGRFMG IRLPVIMSVT FAAVTPMIAI GMNPDIGLLG 120
  121 IFGATIAAGF ITTLLAPLIG RLMPLFPPLV TGVVITSIGL SIIQVGIDWA AGGKGNPQYG 180
  181 NPVYLGISFA VLIFILLITR YAKGFMSNVA VLLGIVFGFL LSWMMNEVNL SGLHDASWFA 240
  241 IVTPMSFGMP IFDPVSILTM TAVLIIVFIE SMGMFLALGE IVGRKLSSHD IIRGLRVDGV 300
  301 GTMIGGTFNS FPHTSFSQNV GLVSVTRVHS RWVCISSGII LILFGMVPKM AVLVASIPQF 360
  361 VLGGAGLVMF GMVLATGIRI LSRCNYTTNR YNLYIVAISL GVGMTPTLSH DFFSKLPAVL 420
  421 QPLLHSGIML ATLSAVVLNV FFNGYQHHAD LVKESVSDKD LKVRTVRMWL LMRKLKKNEH 480
  481 GE