YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YGED_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.82
Transmembrane Helix	19	41	0.90
Non-Cytoplasmic	42	52	0.69
Transmembrane Helix	53	73	0.89
Cytoplasmic	74	86	0.63
Transmembrane Helix	87	115	0.75
Non-Cytoplasmic	116	162	0.56
Transmembrane Helix	163	184	0.90
Cytoplasmic	185	221	0.91
Transmembrane Helix	222	246	0.83
Non-Cytoplasmic	247	255	0.81
Transmembrane Helix	256	277	0.89
Cytoplasmic	278	284	0.70
Transmembrane Helix	285	301	0.96
Non-Cytoplasmic	302	307	0.72
Transmembrane Helix	308	330	0.91
Cytoplasmic	331	343	0.86
Transmembrane Helix	344	366	0.79
Non-Cytoplasmic	367	371	0.58
Transmembrane Helix	372	393	0.91
Cytoplasmic	394	397	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSESVHTNTS LWSKGMKAVI VAQFLSAFGD NALLFATLAL LKAQFYPEWS QPILQMVFVG  60
   61 AYILFAPFVG QVADSFAKGR VMMFANGLKL LGAASICFGI NPFLGYTLVG VGAAAYSPAK 120
  121 YGILGELTTG SKLVKANGLM EASTIAAILL GSVAGGVLAD WHVLVALAAC ALAYGGAVVA 180
  181 NIYIPKLAAA RPGQSWNLIN MTRSFLNACT SLWRNGETRF SLVGTSLFWG AGVTLRFLLV 240
  241 LWVPVALGIT DNATPTYLNA MVAIGIVVGA GAAAKLVTLE TVSRCMPAGI LIGVVVLIFS 300
  301 LQHELLPAYA LLMLIGVMGG FFVVPLNALL QERGKKSVGA GNAIAVQNLG ENSAMLLMLG 360
  361 IYSLAVMIGI PVVPIGIGFG ALFALAITAL WIWQRRH