YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|253978460, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.92
Transmembrane Helix	7	26	0.90
Non-Cytoplasmic	27	32	0.75
Transmembrane Helix	33	51	0.91
Cytoplasmic	52	66	0.86
Transmembrane Helix	67	89	0.93
Non-Cytoplasmic	90	97	0.88
Transmembrane Helix	98	119	0.86
Cytoplasmic	120	125	0.63
Transmembrane Helix	126	151	0.78
Non-Cytoplasmic	152	166	0.70
Transmembrane Helix	167	186	0.88
Cytoplasmic	187	201	0.88
Transmembrane Helix	202	222	0.83
Non-Cytoplasmic	223	228	0.74
Transmembrane Helix	229	250	0.95
Cytoplasmic	251	278	0.81
Transmembrane Helix	279	299	0.84
Non-Cytoplasmic	300	332	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLFRILDPF TLTLITVVLL ASFFPARGDF VPFFENLTTA AIALLFFMHG AKLSREAIIA  60
   61 GGGHWRLHLW VMCSTFVLFP ILGVLFAWWK PVNVDPMLYS GFLYLCILPA TVQSAIAFTS 120
  121 MAGGNVAAAV CSASASSLLG IFLSPLLVGL VMNVHGAGGS LEQVGKIMLQ LLLPFVLGHL 180
  181 SRPWIGDWVS RNKKWIAKTD QTSILLVVYT AFSEAVVNGI WHKVGWGSLL FIVVVSCVLL 240
  241 AIVIVVNVFM ARRLSFNKAD EITIVFCGSK KSLANGIPMA NILFPTSVIG MMVLPLMIFH 300
  301 QIQLMVCAVL ARRYKRQTEQ LQAQQESSAD KA