YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YFAV_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.93
Transmembrane Helix	15	35	0.83
Non-Cytoplasmic	36	51	0.91
Transmembrane Helix	52	74	0.90
Cytoplasmic	75	81	0.83
Transmembrane Helix	82	101	0.94
Non-Cytoplasmic	102	111	0.73
Transmembrane Helix	112	130	0.92
Cytoplasmic	131	141	0.79
Transmembrane Helix	142	164	0.89
Non-Cytoplasmic	165	174	0.87
Transmembrane Helix	175	197	0.94
Cytoplasmic	198	239	0.98
Transmembrane Helix	240	261	0.88
Non-Cytoplasmic	262	272	0.71
Transmembrane Helix	273	295	0.91
Cytoplasmic	296	309	0.82
Transmembrane Helix	310	344	0.87
Non-Cytoplasmic	345	358	0.44
Transmembrane Helix	359	383	0.87
Cytoplasmic	384	390	0.45
Transmembrane Helix	391	415	0.85
Non-Cytoplasmic	416	429	0.47

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTALLDAVV KKNRVRLIPF MLALYVLAFL DRSNIGFAKQ TYQIDTGLSN EAYALGAGIF  60
   61 FVVYAFLGVP ANLLMRKLGA RTWIGTTTLL WGFLSAAMAW ADTEAKFLIV RTLLRAAEAG 120
  121 FFPGMIYLTS QWFPQRNRAS IMGLFYMGAP LALTLGSPLS GALLEMHGFM GHPGWFWMFV 180
  181 IEGLLAVGAG VFTFFWLDDT PEQARFLSKQ EKTLLINQLA SEEQQKVTSR LSDALRNGRV 240
  241 WQLAIIYLTI QVAVYGLIFF LPTQVAALLG TKVGFTASVV TAIPWVAALF GTWLIPRYSD 300
  301 KTGERRNVAA LTLLAAGIGI GLSGLLSPVM AIVALCVAAI GFIAVQPVFW TMPTQLLSGT 360
  361 ALAAGIGFVN LFGAVGGFIA PILRVKAETL FASDAAGLLT LAAVAVIGSL IIFTLRVNRT 420
  421 VAQTDVAHH