YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MDTD_ECOLI, YEGB...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.95
Transmembrane Helix	10	29	0.90
Non-Cytoplasmic	30	44	0.80
Transmembrane Helix	45	68	0.88
Cytoplasmic	69	76	0.80
Transmembrane Helix	77	97	0.94
Non-Cytoplasmic	98	103	0.75
Transmembrane Helix	104	124	0.92
Cytoplasmic	125	133	0.87
Transmembrane Helix	134	155	0.91
Non-Cytoplasmic	156	162	0.78
Transmembrane Helix	163	185	0.92
Cytoplasmic	186	194	0.86
Transmembrane Helix	195	214	0.94
Non-Cytoplasmic	215	221	0.80
Transmembrane Helix	222	244	0.91
Cytoplasmic	245	261	0.86
Transmembrane Helix	262	282	0.87
Non-Cytoplasmic	283	293	0.64
Transmembrane Helix	294	313	0.87
Cytoplasmic	314	328	0.76
Transmembrane Helix	329	348	0.90
Non-Cytoplasmic	349	349	0.43
Transmembrane Helix	350	372	0.61
Cytoplasmic	373	392	0.56
Transmembrane Helix	393	417	0.84
Non-Cytoplasmic	418	431	0.58
Transmembrane Helix	432	453	0.91
Cytoplasmic	454	471	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDLPDSTRW QLWIVAFGFF MQSLDTTIVN TALPSMAQSL GESPLHMHMV IVSYVLTVAV  60
   61 MLPASGWLAD KVGVRNIFFT AIVLFTLGSL FCALSGTLNE LLLARALQGV GGAMMVPVGR 120
  121 LTVMKIVPRE QYMAAMTFVT LPGQVGPLLG PALGGLLVEY ASWHWIFLIN IPVGIIGAIA 180
  181 TLLLMPNYTM QTRRFDLSGF LLLAVGMAVL TLALDGSKGT GLSPLTIAGL VAVGVVALVL 240
  241 YLLHARNNNR ALFSLKLFRT RTFSLGLAGS FAGRIGSGML PFMTPVFLQI GLGFSPFHAG 300
  301 LMMIPMVLGS MGMKRIVVQV VNRFGYRRVL VATTLGLSLV TLLFMTTALL GWYYVLPFVL 360
  361 FLQGMVNSTR FSSMNTLTLK DLPDNLASSG NSLLSMIMQL SMSIGVTIAG LLLGLFGSQH 420
  421 VSVDSGTTQT VFMYTWLSMA LIIALPAFIF ARVPNDTHQN VAISRRKRSA Q