YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YEEO_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.86
Transmembrane Helix	19	38	0.62
Non-Cytoplasmic	39	54	0.68
Transmembrane Helix	55	74	0.67
Cytoplasmic	75	95	0.89
Transmembrane Helix	96	119	0.87
Non-Cytoplasmic	120	137	0.87
Transmembrane Helix	138	160	0.91
Cytoplasmic	161	172	0.85
Transmembrane Helix	173	192	0.93
Non-Cytoplasmic	193	219	0.84
Transmembrane Helix	220	239	0.87
Cytoplasmic	240	246	0.84
Transmembrane Helix	247	269	0.85
Non-Cytoplasmic	270	282	0.70
Transmembrane Helix	283	305	0.84
Cytoplasmic	306	317	0.84
Transmembrane Helix	318	338	0.87
Non-Cytoplasmic	339	360	0.69
Transmembrane Helix	361	384	0.82
Cytoplasmic	385	403	0.91
Transmembrane Helix	404	425	0.91
Non-Cytoplasmic	426	440	0.79
Transmembrane Helix	441	461	0.93
Cytoplasmic	462	473	0.83
Transmembrane Helix	474	494	0.82
Non-Cytoplasmic	495	499	0.46
Transmembrane Helix	500	523	0.74
Cytoplasmic	524	547	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRHILTAKN LLSNPIFKFP NCLPFLSTVC CICRQFVGEN LCSFADSPSL FEMWFHFLQL  60
   61 RSALNISSAL RQVVHGTRWH AKRKSYKVLF WREITPLAVP IFMENACVLL MGVLSTFLVS 120
  121 WLGKDAMAGV GLADSFNMVI MAFFAAIDLG TTVVVAFSLG KRDRRRARVA TRQSLVIMTL 180
  181 FAVLLATLIH HFGEQIIDFV AGDATTEVKA LALTYLELTV LSYPAAAITL IGSGALRGAG 240
  241 NTKIPLLING SLNILNIIIS GILIYGLFSW PGLGFVGAGL GLTISRYIGA VAILWVLAIG 300
  301 FNPALRISLK SYFKPLNFSI IWEVMGIGIP ASVESVLFTS GRLLTQMFVA GMGTSVIAGN 360
  361 FIAFSIAALI NLPGSALGSA STIITGRRLG VGQIAQAEIQ LRHVFWLSTL GLTAIAWLTA 420
  421 PFAGVMASFY TQDPQVKHVV VILIWLNALF MPIWSASWVL PAGFKGARDA RYAMWVSMLS 480
  481 MWGCRVVVGY VLGIMLGWGV VGVWMGMFAD WAVRAVLFYW RMVTGRWLWK YPRPEPQKCE 540
  541 KKPVVSE