YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YEAJ_ECOLI
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.54
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLHHRMLRH FIAASVIVLT SSFLIFELVA SDRAMSAYLR YIVQKADSSF LYDKYQNQSI  60
   61 AAHVMRALAA EQSEVSPEQR RAICEAFESA NNTHGLNLTA HKYPGLRGTL QTASTDCDTI 120
  121 VEAAALLPAF DQAVEGNRHQ DDYGSGLGMA EEKFHYYLDL NDRYVYFYEP VNVEYFAMNN 180
  181 WSFLQSGSIG IDRKDIEKVF TGRTVLSSIY QDQRTKQNVM SLLTPVYVAG QLKGIVLLDI 240
  241 NKNNLRNIFY THDRPLLWRF LNVTLTDTDS GRDIIINQSE DNLFQYVSYV HDLPGGIRVS 300
  301 LSIDILYFIT SSWKSVLFWI LTALILLNMV RMHFRLYQNV SRENISDAMT GLYNRKILTP 360
  361 ELEQRLQKLV QSGSSVMFIA IDMDKLKQIN DTLGHQEGDL AITLLAQAIK QSIRKSDYAI 420
  421 RLGGDEFCII LVDSTPQIAA QLPERIEKRL QHIAPQKEIG FSSGIYAMKE NDTLHDAYKA 480
  481 SDERLYVNKQ NKNSRS

Type	Start	End	Confidence
Signal Peptide	1	31	0.68
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	314	0.96
Transmembrane Helix	315	332	0.68
Cytoplasmic	333	496	0.72