YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73855429, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFIMTAEGH LLFSIACAVF AKNAELTPVL AQGDWWHIVP SAILTCLLPD IDHPKSFLGQ  60
   61 RLKWISKPIA RAFGHRGFTH SLLAVFALLA TFYLKVPEGW FIPADALQGM VLGYLSHILA 120
  121 DMLTPAGVPL LWPCRWRFRL PILVPQKGNQ LERFICMALF VWSVWMPHSL PENSAVRWSS 180
  181 QMINTLQIQF HRLIKHQVEY

Type	Start	End	Confidence
Cytoplasmic	1	8	0.79
Transmembrane Helix	9	26	0.46
Non-Cytoplasmic	27	34	0.44
Transmembrane Helix	35	51	0.55
Cytoplasmic	52	71	0.92
Transmembrane Helix	72	94	0.89
Non-Cytoplasmic	95	112	0.89
Transmembrane Helix	113	134	0.90
Cytoplasmic	135	150	0.93
Transmembrane Helix	151	170	0.76
Non-Cytoplasmic	171	200	0.82