YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YDJE_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.99
Transmembrane Helix	19	40	0.91
Non-Cytoplasmic	41	59	0.87
Transmembrane Helix	60	81	0.93
Cytoplasmic	82	88	0.87
Transmembrane Helix	89	108	0.90
Non-Cytoplasmic	109	113	0.65
Transmembrane Helix	114	136	0.85
Cytoplasmic	137	152	0.78
Transmembrane Helix	153	173	0.92
Non-Cytoplasmic	174	176	0.81
Transmembrane Helix	177	198	0.90
Cytoplasmic	199	263	0.98
Transmembrane Helix	264	284	0.93
Non-Cytoplasmic	285	298	0.83
Transmembrane Helix	299	320	0.94
Cytoplasmic	321	326	0.90
Transmembrane Helix	327	345	0.96
Non-Cytoplasmic	346	351	0.84
Transmembrane Helix	352	375	0.91
Cytoplasmic	376	388	0.84
Transmembrane Helix	389	408	0.90
Non-Cytoplasmic	409	415	0.67
Transmembrane Helix	416	438	0.91
Cytoplasmic	439	452	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQYDQIGAR LDRLPLARFH YRIFGIISFS LLLTGFLSYS GNVVLAKLVS NGWSNNFLNA  60
   61 AFTSALMFGY FIGSLTGGFI GDYFGRRRAF RINLLIVGIA ATGAAFVPDM YWLIFFRFLM 120
  121 GTGMGALIMV GYASFTEFIP ATVRGKWSAR LSFVGNWSPM LSAAIGVVVI AFFSWRIMFL 180
  181 LGGIGILLAW FLSGKYFIES PRWLAGKGQI AGAECQLREV EQQIEREKSI RLPPLTSYQS 240
  241 NSKVKVIKGT FWLLFKGEML RRTLVAITVL IAMNISLYTI TVWIPTIFVN SGIDVDKSIL 300
  301 MTAVIMIGAP VGIFIAALII DHFPRRLFGS TLLIIIAVLG YIYSIQTTEW AILIYGLVMI 360
  361 FFLYMYVCFA SAVYIPELWP THLRLRGSGF VNAVGRIVAV FTPYGVAALL THYGSITVFM 420
  421 VLGVMLLLCA LVLSIFGIET RKVSLEEISE VN