YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YDIK_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.97
Transmembrane Helix	10	30	0.93
Non-Cytoplasmic	31	35	0.73
Transmembrane Helix	36	55	0.91
Cytoplasmic	56	64	0.87
Transmembrane Helix	65	86	0.94
Non-Cytoplasmic	87	157	0.69
Transmembrane Helix	158	179	0.88
Cytoplasmic	180	194	0.53
Transmembrane Helix	195	211	0.49
Non-Cytoplasmic	212	212	0.31
Transmembrane Helix	213	244	0.72
Cytoplasmic	245	245	0.38
Transmembrane Helix	246	269	0.81
Non-Cytoplasmic	270	275	0.57
Transmembrane Helix	276	295	0.83
Cytoplasmic	296	307	0.60
Transmembrane Helix	308	334	0.87
Non-Cytoplasmic	335	370	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNVRQPRDV AQILLSVLFL AIMIVACLWI VQPFILGFAW AGTVVIATWP VLLRLQKIMF  60
   61 GRRSLAVLVM TLLLVMVFII PIALLVNSIV DGSGPLIKAI SSGDMTLPDL AWLNTIPVIG 120
  121 AKLYAGWHNL LDMGGTAIMA KVRPYIGTTT TWFVGQAAHI GRFMVHCALM LLFSALLYWR 180
  181 GEQVAQGIRH FATRLAGVRG DAAVLLAAQA IRAVALGVVV TALVQAVLGG IGLAVSGVPY 240
  241 ATLLTVLMIL SCLVQLGPLP VLIPAIIWLY WTGDTTWGTV LLVWSGVVGT LDNVIRPMLI 300
  301 RMGADLPLIL ILSGVIGGLI AFGMIGLFIG PVLLAVSWRL FAAWVEEVPP PTDQPEEILE 360
  361 ELGEIEKPNK