YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TPPB_ECOLI, YDGR...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	34	0.79
Transmembrane Helix	35	53	0.70
Non-Cytoplasmic	54	59	0.83
Transmembrane Helix	60	80	0.94
Cytoplasmic	81	89	0.76
Transmembrane Helix	90	106	0.97
Non-Cytoplasmic	107	112	0.72
Transmembrane Helix	113	132	0.90
Cytoplasmic	133	151	0.89
Transmembrane Helix	152	173	0.92
Non-Cytoplasmic	174	180	0.72
Transmembrane Helix	181	200	0.97
Cytoplasmic	201	219	0.88
Transmembrane Helix	220	239	0.95
Non-Cytoplasmic	240	244	0.85
Transmembrane Helix	245	266	0.90
Cytoplasmic	267	274	0.93
Transmembrane Helix	275	295	0.91
Non-Cytoplasmic	296	322	0.94
Transmembrane Helix	323	341	0.94
Cytoplasmic	342	352	0.78
Transmembrane Helix	353	371	0.96
Non-Cytoplasmic	372	388	0.74
Transmembrane Helix	389	408	0.90
Cytoplasmic	409	418	0.71
Transmembrane Helix	419	440	0.90
Non-Cytoplasmic	441	459	0.85
Transmembrane Helix	460	478	0.96
Cytoplasmic	479	500	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTANQKPTE SVSLNAFKQP KAFYLIFSIE LWERFGYYGL QGIMAVYLVK QLGMSEADSI  60
   61 TLFSSFSALV YGLVAIGGWL GDKVLGTKRV IMLGAIVLAI GYALVAWSGH DAGIVYMGMA 120
  121 AIAVGNGLFK ANPSSLLSTC YEKNDPRLDG AFTMYYMSVN IGSFFSMIAT PWLAAKYGWS 180
  181 VAFALSVVGL LITIVNFAFC QRWVKQYGSK PDFEPINYRN LLLTIIGVVA LIAIATWLLH 240
  241 NQEVARMALG VVAFGIVVIF GKEAFAMKGA ARRKMIVAFI LMLEAIIFFV LYSQMPTSLN 300
  301 FFAIRNVEHS ILGLAVEPEQ YQALNPFWII IGSPILAAIY NKMGDTLPMP TKFAIGMVMC 360
  361 SGAFLILPLG AKFASDAGIV SVSWLVASYG LQSIGELMIS GLGLAMVAQL VPQRLMGFIM 420
  421 GSWFLTTAGA NLIGGYVAGM MAVPDNVTDP LMSLEVYGRV FLQIGVATAV IAVLMLLTAP 480
  481 KLHRMTQDDA ADKAAKAAVA